Basic Information
Locus ID:
Oco05G015360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 15557118 | 15563215 | - | Oco05G015360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 80,551.85 Da | 39.40 | 82.36 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 130 | 187 | 6.7E-11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 42 | 81 | 2.6E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 446 | 713 | 5.4E-39 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 41 | 258 | 5.1E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 425 | 715 | 2.97E-67 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 282 | 8.2E-48 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 408 | 521 | 5.1E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 522 | 729 | 4.8E-54 | - |
| SMART | SM00369 | LRR_typ_2 | 153 | 175 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 176 | 199 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 200 | 223 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 106 | 135 | 63.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 155 | 176 | 7.288416 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 444 | 718 | 33.912426 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 450 | 473 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 746 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_052148534.1 | protein STRUBBELIG-RECEPTOR FAMILY 7-like [Oryza glaberrima] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KER0 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology