Basic Information
Locus ID:
Oco05G013820
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 13744781 | 13756767 | - | Oco05G013820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 96,549.46 Da | 52.30 | 74.97 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 29 | 128 | 3.22327E-12 | - |
| CDD | cd00159 | RhoGAP | 189 | 328 | 8.82516E-30 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 621 | 701 | 1.5E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 28 | 132 | 1.4E-12 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 189 | 333 | 4.4E-30 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 23 | 140 | 4.93E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 189 | 382 | 1.26E-32 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 159 | 382 | 7.6E-40 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 17 | 134 | 3.9E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 186 | 377 | 6.1E-24 | IPR000198 |
| SMART | SM00233 | PH_update | 27 | 135 | 2.6E-16 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 180 | 380 | 29.696978 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 26 | 133 | 15.7531 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 797 | - | - |
| Coils | Coil | Coil | 826 | 846 | - | - |
| Coils | Coil | Coil | 670 | 704 | - | - |
| Coils | Coil | Coil | 579 | 606 | - | - |
| Coils | Coil | Coil | 611 | 645 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_052149426.1 | rho GTPase-activating protein 7-like [Oryza glaberrima] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | Q10L77 | Pleckstriny domain-containing protein, putative, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g24180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology