halophFGD

Basic Information

Locus ID: Oco05G013370

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: A domain family that is part of the cupin metalloenzyme superfamily.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG05	13310600	13319057	+	Oco05G013370

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.32	102,283.00 Da	53.67	83.41	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08879	WRC	6	44	1.6E-14	IPR014977
Pfam	PF10497	Zinc-finger domain of monoamine-oxidase A repressor R1	134	198	1.2E-5	IPR018866
Pfam	PF02373	JmjC domain, hydroxylase	731	826	7.9E-8	IPR003347
SUPERFAMILY	SSF51197	Clavaminate synthase-like	458	853	4.39E-20	-
Gene3D	G3DSA:2.60.120.650	Cupin	447	852	8.3E-104	-
SMART	SM00558	cupin_9	557	843	3.2E-29	IPR003347
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	139	184	8.653498	IPR001841
ProSiteProfiles	PS51667	WRC domain profile.	5	49	20.491255	IPR014977
ProSiteProfiles	PS51184	JmjC domain profile.	576	843	13.779556	IPR003347
MobiDBLite	mobidb-lite	consensus disorder prediction	313	335	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	54	73	-	-

KEGG Pathway

KO Term:

K02987 (small subunit ribosomal protein S4e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09060.1	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase.
RefSeq	XP_015632336.1	lysine-specific demethylase JMJ25 isoform X2 [Oryza sativa Japonica Group]
Swiss-Prot	F4HZD1	E3 ubiquitin-protein ligase JMJ24 OS=Arabidopsis thaliana OX=3702 GN=JMJ24 PE=1 SV=1
TrEMBL	A0A6G1BKA0	JmjC domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004054 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13878, jg20453, jg24873, jg30979, jg38643, jg39734
Aizoaceae	Mesembryanthemum crystallinum	6	gene_11988, gene_19599, gene_20504, gene_22003, gene_22180 ... gene_3319
Amaranthaceae	Atriplex hortensis	8	Ah000992, Ah005768, Ah017464, Ah017845, Ah018611, Ah038539 ... Ah038543, Ah038544
Amaranthaceae	Beta vulgaris	10	BVRB_3g051890, BVRB_4g081190, BVRB_5g115270, BVRB_8g181330 ... BVRB_8g185630, BVRB_8g185640, BVRB_9g202810, BVRB_9g202820, BVRB_9g202830, BVRB_9g208760
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg14700, Sbi_jg17106, Sbi_jg26440, Sbi_jg29002 ... Sbi_jg29004, Sbi_jg39350, Sbi_jg39371, Sbi_jg40040, Sbi_jg40042, Sbi_jg40201, Sbi_jg44430, Sbi_jg47868, Sbi_jg50177, Sbi_jg54987, Sbi_jg55000, Sbi_jg55469, Sbi_jg59908, Sbi_jg61654, Sbi_jg62835
Amaranthaceae	Salicornia europaea	12	Seu_jg14291, Seu_jg14292, Seu_jg14294, Seu_jg14966 ... Seu_jg14986, Seu_jg1782, Seu_jg22117, Seu_jg24005, Seu_jg26027, Seu_jg370, Seu_jg6922, Seu_jg6923
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00005630, GOSA_00011372, GOSA_00012511, GOSA_00012512 ... GOSA_00015318, GOSA_00020081, GOSA_00023799
Amaranthaceae	Suaeda glauca	17	Sgl01324, Sgl06408, Sgl31271, Sgl36615, Sgl41591, Sgl45716 ... Sgl46379, Sgl50471, Sgl56133, Sgl56134, Sgl61701, Sgl78073, Sgl78074, Sgl78075, Sgl80581, Sgl80582, Sgl80583
Amaranthaceae	Chenopodium album	27	gene:ENSEOMG00000004497, gene:ENSEOMG00000007039 ... gene:ENSEOMG00000009457, gene:ENSEOMG00000009679, gene:ENSEOMG00000010096, gene:ENSEOMG00000011997, gene:ENSEOMG00000014955, gene:ENSEOMG00000016575, gene:ENSEOMG00000017796, gene:ENSEOMG00000020665, gene:ENSEOMG00000026315, gene:ENSEOMG00000028428, gene:ENSEOMG00000029753, gene:ENSEOMG00000031590, gene:ENSEOMG00000032792, gene:ENSEOMG00000038337, gene:ENSEOMG00000039300, gene:ENSEOMG00000040417, gene:ENSEOMG00000040503, gene:ENSEOMG00000042368, gene:ENSEOMG00000044680, gene:ENSEOMG00000045089, gene:ENSEOMG00000045805, gene:ENSEOMG00000048443, gene:ENSEOMG00000051076, gene:ENSEOMG00000052371, gene:ENSEOMG00000052654
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.3AG0005190, CQ.Regalona.r1.3BG0005260 ... CQ.Regalona.r1.4AG0008360, CQ.Regalona.r1.4BG0008490, CQ.Regalona.r1.5AG0021400, CQ.Regalona.r1.5BG0022750, CQ.Regalona.r1.8AG0001340, CQ.Regalona.r1.8AG0003740, CQ.Regalona.r1.8BG0001260, CQ.Regalona.r1.8BG0003850, CQ.Regalona.r1.9AG0000830, CQ.Regalona.r1.9AG0000850, CQ.Regalona.r1.9AG0000870, CQ.Regalona.r1.9AG0000880, CQ.Regalona.r1.9BG0021500, CQ.Regalona.r1.9BG0021520
Anacardiaceae	Pistacia vera	13	pistato.v30006270, pistato.v30068660, pistato.v30073640 ... pistato.v30075170, pistato.v30083790, pistato.v30094670, pistato.v30131780, pistato.v30165040, pistato.v30223040, pistato.v30223050, pistato.v30224990, pistato.v30288220, pistato.v30288230
Apiaceae	Apium graveolens	22	Ag11G04310, Ag11G04463, Ag1G00529, Ag1G01205, Ag2G00723 ... Ag2G00727, Ag3G01537, Ag3G02034, Ag4G01201, Ag4G01330, Ag5G01314, Ag5G01728, Ag6G02722, Ag6G02723, Ag7G00662, Ag7G00689, Ag7G01034, Ag7G01038, Ag8G00999, Ag8G01204, AgUnG00379, AgUnG01468
Arecaceae	Cocos nucifera	4	COCNU_01G009990, COCNU_04G009700, COCNU_08G009770 ... COCNU_09G006650
Arecaceae	Phoenix dactylifera	2	gene-LOC103716776, gene-LOC103722119
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.1761.V1.1, AsparagusV1_01.1762.V1.1 ... AsparagusV1_05.2001.V1.1, AsparagusV1_06.1648.V1.1, AsparagusV1_08.1831.V1.1, AsparagusV1_08.1832.V1.1, AsparagusV1_Unassigned.961.V1.1
Asteraceae	Flaveria trinervia	13	Ftri11G19228, Ftri12G28799, Ftri13G29895, Ftri15G20400 ... Ftri18G33599, Ftri4G08157, Ftri5G08862, Ftri5G15420, Ftri5G19348, Ftri5G25792, FtriNA16041, FtriNA20998, FtriNA21434
Brassicaceae	Arabidopsis thaliana	6	AT1G09060.3, AT1G11950.1, AT1G62310.1, AT3G07610.3 ... AT4G00990.1, AT4G21430.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10006723m.g.v1.0, Thhalv10006772m.g.v1.0 ... Thhalv10020080m.g.v1.0, Thhalv10023846m.g.v1.0, Thhalv10024332m.g.v1.0, Thhalv10028389m.g.v1.0, Thhalv10029199m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g07660.v2.2, Sp1g10640.v2.2, Sp2g02310.v2.2 ... Sp2g06730.v2.2, Sp3g06550.v2.2, Sp6g01160.v2.2, Sp7g19550.v2.2
Brassicaceae	Brassica nigra	17	BniB01g056320.2N, BniB02g059000.2N, BniB02g070720.2N ... BniB03g003070.2N, BniB03g004820.2N, BniB04g021200.2N, BniB04g039980.2N, BniB05g014650.2N, BniB05g014660.2N, BniB05g015690.2N, BniB05g053980.2N, BniB05g053990.2N, BniB05g058880.2N, BniB08g041200.2N, BniB08g043370.2N, BniB08g043410.2N, BniB08g049370.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G1485, Ceq08G1641, Ceq09G1623
Casuarinaceae	Casuarina glauca	4	Cgl04G1648, Cgl04G1825, Cgl06G1240, Cgl08G1681
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno03g13140, gene.Cymno05g07960, gene.Cymno05g12740 ... gene.Cymno12g03350, gene.Cymno18g04870
Dunaliellaceae	Dunaliella salina	1	Dusal.0055s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06040, gene.Thate03g26030, gene.Thate05g12620 ... gene.Thate06g06640, gene.Thate09g08010
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11692
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2868, evm.TU.LG02.2016, evm.TU.LG03.2456 ... evm.TU.LG05.1126, evm.TU.LG12.1055, evm.TU.LG12.1174
Plantaginaceae	Plantago ovata	19	Pov_00000577, Pov_00000836, Pov_00005720, Pov_00005800 ... Pov_00005975, Pov_00008813, Pov_00013315, Pov_00013979, Pov_00014065, Pov_00014078, Pov_00014079, Pov_00014082, Pov_00014083, Pov_00014084, Pov_00018488, Pov_00019689, Pov_00019691, Pov_00019696, Pov_00022449
Plumbaginaceae	Limonium bicolor	8	Lb0G37225, Lb1G02885, Lb1G04170, Lb2G14462, Lb3G20676 ... Lb7G33757, Lb7G33759, Lb7G34617
Poaceae	Echinochloa crus-galli	15	AH01.1077, AH01.3657, AH07.146, AH07.4027, BH01.1619 ... BH01.4004, BH03.1957, BH07.3840, BH07.57, CH01.1695, CH01.4277, CH03.2165, CH03.4773, CH07.3906, CH08.2145
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0098900, gene-QOZ80_2AG0151450 ... gene-QOZ80_2BG0152360, gene-QOZ80_2BG0206820, gene-QOZ80_3AG0225890, gene-QOZ80_3AG0247920, gene-QOZ80_4AG0314440, gene-QOZ80_6AG0534350, gene-QOZ80_6BG0487430
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0024370.1, HORVU.MOREX.r3.4HG0375930.2 ... HORVU.MOREX.r3.5HG0478600.1, HORVU.MOREX.r3.6HG0542720.1
Poaceae	Lolium multiflorum	5	gene-QYE76_004948, gene-QYE76_019413, gene-QYE76_065165 ... gene-QYE76_067279, gene-QYE76_067882
Poaceae	Oryza coarctata	8	Oco03G000460, Oco04G000450, Oco04G026540, Oco05G013370 ... Oco06G013040, Oco06G017110, Oco17G004180, Oco18G004120
Poaceae	Oryza sativa	6	LOC_Os02g01940.1, LOC_Os02g58210.1, LOC_Os03g22540.1 ... LOC_Os03g31594.1, LOC_Os09g22040.1, LOC_Os09g22540.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G161000, gene-BS78_01G356300 ... gene-BS78_02G174100, gene-BS78_04G007200, gene-BS78_04G328200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102712, Pt_Chr0108151, Pt_Chr0207427, Pt_Chr0303636 ... Pt_Chr0401123
Poaceae	Sporobolus alterniflorus	14	Chr01G034430, Chr04G011160, Chr04G014320, Chr07G022840 ... Chr0G010380, Chr0G010390, Chr10G010710, Chr12G005150, Chr14G013370, Chr14G013380, Chr15G000180, Chr15G027100, Chr21G012510, Chr24G007120
Poaceae	Thinopyrum elongatum	5	Tel4E01G247600, Tel5E01G049600, Tel5E01G049700 ... Tel5E01G337600, Tel6E01G077000
Poaceae	Triticum dicoccoides	9	gene_TRIDC1AG015340, gene_TRIDC1BG018610 ... gene_TRIDC3BG080580, gene_TRIDC4AG019830, gene_TRIDC4BG029410, gene_TRIDC5AG032590, gene_TRIDC5BG034430, gene_TRIDC6AG003070, gene_TRIDC6BG004380
Poaceae	Triticum aestivum	14	TraesCS1A02G107000.1, TraesCS1B02G124400.1 ... TraesCS1D02G107800.1, TraesCS3B02G557600.1, TraesCS4A02G139300.7, TraesCS4B02G154300.1, TraesCS4D02G165700.3, TraesCS5A02G202300.1, TraesCS5B02G200900.1, TraesCS5D02G024900.1, TraesCS5D02G208700.2, TraesCS6A02G026500.2, TraesCS6B02G036900.2, TraesCS6D02G030300.2
Poaceae	Zea mays	5	Zm00001eb049830_P003, Zm00001eb190750_P001 ... Zm00001eb209780_P001, Zm00001eb311870_P002, Zm00001eb394830_P003
Poaceae	Zoysia japonica	3	nbis-gene-1612, nbis-gene-20232, nbis-gene-38548
Poaceae	Zoysia macrostachya	4	Zma_g1226, Zma_g23896, Zma_g32457, Zma_g3313
Portulacaceae	Portulaca oleracea	12	evm.TU.LG01.1919, evm.TU.LG02.842, evm.TU.LG05.1324 ... evm.TU.LG09.2015, evm.TU.LG11.115, evm.TU.LG11.1676, evm.TU.LG14.1101, evm.TU.LG16.1375, evm.TU.LG18.1239, evm.TU.LG20.1161, evm.TU.LG20.643, evm.TU.LG21.1015
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g27010, gene.Posoc02g32060, gene.Posoc04g11580 ... gene.Posoc07g02160, gene.Posoc09g05020
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_12_RagTag.1022, evm.TU.Scaffold_13_RagTag.28 ... evm.TU.Scaffold_12_RagTag.928, evm.TU.Scaffold_15_RagTag.461, evm.TU.Scaffold_1_RagTag.133, evm.TU.Scaffold_2_RagTag.2056
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-23338, nbisL1-mrna-23847, nbisL1-mrna-23971 ... nbisL1-mrna-26641, nbisL1-mrna-29593, nbisL1-mrna-8133
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-12447, nbisL1-mrna-14210, nbisL1-mrna-17752 ... nbisL1-mrna-4240, nbisL1-mrna-5121, nbisL1-mrna-5454, nbisL1-mrna-573
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-15872, nbisL1-mrna-20756, nbisL1-mrna-20757 ... nbisL1-mrna-21646, nbisL1-mrna-21720, nbisL1-mrna-5214
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000001l.241, evm.TU.utg000009l.59 ... evm.TU.utg000012l.98, evm.TU.utg000015l.21, evm.TU.utg000015l.96, evm.TU.utg000027l.21, evm.TU.utg000027l.75
Rhizophoraceae	Kandelia obovata	5	Maker00002465, Maker00005779, Maker00011207, Maker00015410 ... Maker00017434
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10669, nbisL1-mrna-10718, nbisL1-mrna-13847 ... nbisL1-mrna-19145, nbisL1-mrna-21975, nbisL1-mrna-6070, nbisL1-mrna-7862
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-124, nbisL1-mrna-16154, nbisL1-mrna-16949 ... nbisL1-mrna-23295, nbisL1-mrna-23410, nbisL1-mrna-23892, nbisL1-mrna-2547
Salicaceae	Populus euphratica	10	populus_peu10176, populus_peu10177, populus_peu10393 ... populus_peu13380, populus_peu13842, populus_peu13923, populus_peu15711, populus_peu18285, populus_peu18445, populus_peu28020
Solanaceae	Lycium barbarum	12	gene-LOC132608944, gene-LOC132609486, gene-LOC132609487 ... gene-LOC132616094, gene-LOC132621918, gene-LOC132622182, gene-LOC132622598, gene-LOC132623452, gene-LOC132623453, gene-LOC132632087, gene-LOC132638227, gene-LOC132639227
Solanaceae	Solanum chilense	8	SOLCI001436700, SOLCI001436800, SOLCI003381300 ... SOLCI004632500, SOLCI005011300, SOLCI005573200, SOLCI006121300, SOLCI007164900
Solanaceae	Solanum pennellii	8	gene-LOC107008917, gene-LOC107010511, gene-LOC107010872 ... gene-LOC107011550, gene-LOC107014353, gene-LOC107017980, gene-LOC107028610, gene-LOC107030481
Tamaricaceae	Reaumuria soongarica	7	STRG.15485_chr06_+, STRG.21827_chr08_-, gene_16646, gene_422 ... gene_17070, gene_17479, gene_722
Tamaricaceae	Tamarix chinensis	7	TC01G3497, TC02G1481, TC03G1982, TC05G2010, TC07G1623 ... TC07G2584, TC09G1538
Zosteraceae	Zostera marina	6	Zosma01g29240.v3.1, Zosma04g12150.v3.1, Zosma06g02060.v3.1 ... Zosma108g00010.v3.1, Zosma135g00010.v3.1, Zosma388g00010.v3.1