Basic Information
Locus ID:
Oco05G011910
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40-like Beta Propeller Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 11776886 | 11779576 | + | Oco05G011910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 72,818.84 Da | 42.02 | 72.91 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 472 | 486 | 1.3E-4 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 403 | 434 | 0.0055 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 527 | 546 | 0.1 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 177 | 216 | 0.012 | IPR011659 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 141 | 546 | 5.36E-28 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 363 | 494 | 3.8E-19 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 495 | 610 | 3.8E-7 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 139 | 352 | 5.7E-12 | IPR011042 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_052149423.1 | uncharacterized protein LOC127767970 [Oryza glaberrima] | 0 |
| TrEMBL | A0A0E0KCY0 | Protein TolB OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology