Basic Information
Locus ID:
Oco05G009570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 9646219 | 9651989 | + | Oco05G009570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 78,597.49 Da | 46.94 | 94.16 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 296 | 338 | 6.60419E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 500 | 538 | 1.0E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 417 | 456 | 6.2E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 292 | 362 | 2.2E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 391 | 665 | 2.07E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 367 | 1.14E-30 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 51 | 162 | 9.6E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 364 | 476 | 1.1E-18 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 477 | 667 | 1.4E-27 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 363 | 6.4E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 458 | 498 | 13.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 295 | 358 | 2.0E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 499 | 539 | 0.0041 | IPR000225 |
| SMART | SM00185 | arm_5 | 625 | 665 | 68.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 540 | 580 | 93.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 375 | 415 | 36.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 417 | 457 | 3.9E-4 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 291 | 365 | 45.619041 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | 10.4824 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| Coils | Coil | Coil | 42 | 62 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_052148833.1 | protein spotted leaf 11-like [Oryza glaberrima] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0KBY7 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology