Basic Information
Locus ID:
Oco05G009130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 9120818 | 9126792 | + | Oco05G009130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 43,873.53 Da | 44.38 | 73.58 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07607 | BAR_SH3P_plant | 46 | 254 | 8.06913E-121 | - |
| Pfam | PF14604 | Variant SH3 domain | 320 | 368 | 4.1E-12 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 317 | 374 | 1.44E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 255 | 3.14E-21 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 275 | 1.1E-9 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 300 | 381 | 6.5E-17 | - |
| SMART | SM00326 | SH3_2 | 316 | 371 | 2.4E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 313 | 372 | 20.352184 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 311 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_015627859.1 | SH3 domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KBQ2 | SH3 domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology