Basic Information
Locus ID:
Oco05G008490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 8482558 | 8486379 | - | Oco05G008490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 47,207.27 Da | 65.03 | 58.90 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 337 | 377 | 6.89382E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | 5.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 337 | 383 | 6.1E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 387 | 4.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 338 | 376 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 377 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 421 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052147535.1 | probable E3 ubiquitin-protein ligase LOG2 [Oryza glaberrima] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | I1P9L0 | RING-type E3 ubiquitin transferase OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology