Basic Information
Locus ID:
Oco05G008470
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 8461524 | 8469877 | - | Oco05G008470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 127,201.35 Da | 42.33 | 80.92 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 368 | 679 | 1.2869E-37 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 503 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 935 | 968 | 0.0098 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 365 | 679 | 4.48E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 852 | 1114 | 2.65E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 700 | 4.6E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 820 | 1085 | 9.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 561 | 3.2E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 417 | 457 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 637 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 548 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 2.9E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 51 | 109 | 1.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 929 | 968 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1020 | 1061 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 842 | 883 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 681 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 396 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 594 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 886 | 926 | 1.6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 936 | 968 | 9.889235 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 51 | 109 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 936 | 977 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 513 | 9.40565 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 491 | 505 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1127 | 1150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1150 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_015631120.1 | protein TPR3 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0CY72 | Chorismate synthase OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology