Basic Information
Locus ID:
Oco05G008320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 8318094 | 8325223 | - | Oco05G008320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 54,269.94 Da | 34.26 | 101.75 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 263 | 354 | 3.3537E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 66 | 245 | 4.2E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 261 | 358 | 2.4E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 259 | 390 | 1.37E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 245 | 419 | 4.8E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 262 | 360 | 6.4E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 244 | 363 | 21.173668 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 64 | 246 | 23.826645 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 303 | 316 | 2.6E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 278 | 290 | 2.6E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 325 | 333 | 2.6E-5 | IPR000008 |
| Coils | Coil | Coil | 396 | 416 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_015689834.2 | calcium-dependent lipid-binding protein-like [Oryza brachyantha] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KBC2 | Synaptotagmin-5 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology