Basic Information
Locus ID:
Oco05G008190
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
GAE4
Description:
RmlD substrate binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 8180127 | 8181904 | + | Oco05G008190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 12,447.34 Da | 34.30 | 94.87 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 24 | 111 | 8.4E-23 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 24 | 112 | 1.31E-24 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 23 | 115 | 1.1E-36 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 24 | 111 | 2.6E-26 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 28 | 112 | 2.2E-31 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 72 | 86 | 1.3E-7 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 50 | 65 | 1.3E-7 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 13 | 112 | 15.659098 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_015628712.1 | 40S ribosomal protein S20-1 [Oryza sativa Japonica Group] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A8J8YEJ9 | Os03g0249400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0249400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology