Basic Information
Locus ID:
Oco05G007710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 7704778 | 7706105 | - | Oco05G007710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 45,784.83 Da | 38.62 | 102.65 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16654 | RING-Ubox_CHIP | 35 | 101 | 4.2314E-22 | - |
| Pfam | PF04564 | U-box domain | 35 | 106 | 4.6E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 204 | 408 | 2.51E-9 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 109 | 8.24E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 105 | 4.1E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 129 | 412 | 1.8E-7 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 38 | 101 | 1.0E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 34 | 108 | 38.69286 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_015629195.1 | U-box domain-containing protein 21 [Oryza sativa Japonica Group] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0KB35 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology