Basic Information
Locus ID:
Oco05G005890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 5730652 | 5735749 | + | Oco05G005890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 66,758.12 Da | 32.89 | 89.32 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 457 | 1.0E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 117 | 5.8E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 24 | 116 | 7.61E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 119 | 6.7E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 481 | 87.694016 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 96 | 8.813578 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 606 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_015691259.1 | BTB/POZ domain-containing protein NPY4 [Oryza brachyantha] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CGA7 | NPH3 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology