Basic Information
Locus ID:
Oco05G004950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 4682873 | 4684544 | - | Oco05G004950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 37,954.11 Da | 63.03 | 76.80 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 132 | 175 | 1.76233E-17 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 4.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 181 | 1.87E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 181 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 2.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 212 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_040378502.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Oryza brachyantha] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0K9V2 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH01.4715, BH05.3232, CH01.5292, Contig181.137 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236660, gene-QOZ80_3BG0291370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406500.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_017444, gene-QYE76_034492, gene-QYE76_070258 ... |
| Poaceae | Oryza coarctata | 2 | Oco05G004950, Oco06G005070 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G454700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G002440, Chr07G008790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G507000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG056420, gene_TRIDC4BG051850 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G404600.1.cds1, TraesCS4B02G304400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb006670_P001, Zm00001eb401490_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2674 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1909 |