halophFGD

Basic Information

Locus ID: Oco05G003610

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Short Name: H2A

Description: chromatin silencing

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG05	3432339	3432916	+	Oco05G003610

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.06	7,936.11 Da	40.86	86.36	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF16211	C-terminus of histone H2A	47	76	3.0E-11	IPR032454
SUPERFAMILY	SSF47113	Histone-fold	36	73	2.75E-5	IPR009072
Gene3D	G3DSA:1.10.20.10	Histone, subunit A	17	77	4.5E-13	IPR009072
PRINTS	PR00620	Histone H2A signature	41	53	3.0E-10	IPR002119
PRINTS	PR00620	Histone H2A signature	54	72	3.0E-10	IPR002119
PRINTS	PR00620	Histone H2A signature	1	12	3.0E-10	IPR002119
MobiDBLite	mobidb-lite	consensus disorder prediction	1	39	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	32	-	-

Gene Ontology

Molecular Function:

GO:0003677 (DNA binding) GO:0046982 (protein heterodimerization activity)

Cellular Component:

GO:0000786 (nucleosome)

KEGG Pathway

KO Term:

K02183 (calmodulin)

Pathway:

ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway) ko04015 (Rap1 signaling pathway) map04015 (Rap1 signaling pathway) ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04020 (Calcium signaling pathway) map04020 (Calcium signaling pathway) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04024 (cAMP signaling pathway) map04024 (cAMP signaling pathway) ko04070 (Phosphatidylinositol signaling system) map04070 (Phosphatidylinositol signaling system) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04218 (Cellular senescence) map04218 (Cellular senescence) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction) ko04745 (Phototransduction - fly) map04745 (Phototransduction - fly) ko04750 (Inflammatory mediator regulation of TRP channels) map04750 (Inflammatory mediator regulation of TRP channels) ko04916 (Melanogenesis) map04916 (Melanogenesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54560.1	histone H2A 11. Encodes HTA11, a histone H2A protein.
RefSeq	XP_015628946.1	probable histone H2A variant 1 [Oryza sativa Japonica Group]
Swiss-Prot	Q8H7Y8	Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1
TrEMBL	A0A0E0K937	Histone H2A OS=Oryza punctata OX=4537 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19094, jg20159
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12176, gene_12179, gene_20628
Amaranthaceae	Atriplex hortensis	3	Ah008979, Ah036086, Ah038270
Amaranthaceae	Beta vulgaris	1	BVRB_4g089610
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14556, Sbi_jg18379, Sbi_jg36777, Sbi_jg46205
Amaranthaceae	Salicornia europaea	3	Seu_jg10412, Seu_jg4709, Seu_jg4710
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012699, GOSA_00017399
Amaranthaceae	Suaeda glauca	5	Sgl23492, Sgl28621, Sgl78249, Sgl80740, Sgl80744
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010223, gene:ENSEOMG00000015788 ... gene:ENSEOMG00000028958, gene:ENSEOMG00000037776, gene:ENSEOMG00000040364, gene:ENSEOMG00000051896
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2BG0001840, CQ.Regalona.r1.4BG0025240 ... CQ.Regalona.r1.9AG0002500, CQ.Regalona.r1.9BG0020020
Anacardiaceae	Pistacia vera	1	pistato.v30155780
Apiaceae	Apium graveolens	5	Ag11G03140, Ag2G00130, Ag2G00131, Ag3G00487, Ag6G02599
Arecaceae	Cocos nucifera	2	COCNU_01G012410, COCNU_11G010780
Arecaceae	Phoenix dactylifera	3	gene-LOC103702321, gene-LOC103713594, gene-LOC103719059
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.469.V1.1, AsparagusV1_05.2091.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G26604, Ftri16G20018, Ftri16G33854, Ftri2G00241 ... Ftri7G20573
Brassicaceae	Arabidopsis thaliana	2	AT5G48090.1, AT5G55390.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003648m.g.v1.0, Thhalv10012452m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g18510.v2.2, Sp6g17310.v2.2
Brassicaceae	Brassica nigra	3	BniB01g000310.2N, BniB02g069350.2N, BniB05g035280.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G1383
Casuarinaceae	Casuarina glauca	1	Cgl01G1548
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g09240
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g08750, gene.Thate09g18950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-9065, nbisL1-mrna-9066
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.1954
Plantaginaceae	Plantago ovata	2	Pov_00030340, Pov_00031940
Plumbaginaceae	Limonium bicolor	5	Lb1G03444, Lb1G03445, Lb1G03450, Lb5G28300, Lb7G35255
Poaceae	Echinochloa crus-galli	10	AH03.1418, AH08.1155, AH08.1982, BH03.1551, BH08.1132 ... BH08.2086, CH03.1713, CH04.1589, CH08.1242, CH08.2260
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_6AG0521300, gene-QOZ80_6BG0473920 ... gene-QOZ80_8AG0626260, gene-QOZ80_8AG0636240, gene-QOZ80_8BG0654570, gene-QOZ80_8BG0664920
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0471230.1, HORVU.MOREX.r3.7HG0678920.1
Poaceae	Lolium multiflorum	3	gene-QYE76_004282, gene-QYE76_004283, gene-QYE76_029904
Poaceae	Oryza coarctata	7	Oco01G011100, Oco05G003610, Oco09G006280, Oco15G011550 ... Oco16G006230, Oco16G006240, Oco16G011040
Poaceae	Oryza sativa	5	LOC_Os01g32710.1, LOC_Os01g32720.1, LOC_Os08g24880.1 ... LOC_Os08g24946.1, LOC_Os08g39250.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G138300, gene-BS78_07G180600, gene-BS78_K295200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0404044, Pt_Chr0702700, Pt_Chr0702752
Poaceae	Sporobolus alterniflorus	9	Chr10G003090, Chr11G015780, Chr14G006380, Chr16G012830 ... Chr16G016700, Chr17G012280, Chr17G016090, Chr21G006890, Chr21G006950
Poaceae	Thinopyrum elongatum	3	Tel5E01G294300, Tel7E01G394600, Tel7E01G429400
Poaceae	Triticum dicoccoides	5	gene_TRIDC5AG028640, gene_TRIDC5BG030220 ... gene_TRIDC7AG027540, gene_TRIDC7AG031090, gene_TRIDC7BG023510
Poaceae	Triticum aestivum	7	TraesCS5A02G175300.3, TraesCS5B02G172800.1 ... TraesCS5D02G179800.1, TraesCS7A02G243300.1, TraesCS7B02G148200.1, TraesCS7D02G219700.1, TraesCS7D02G242100.1
Poaceae	Zea mays	5	Zm00001eb094550_P001, Zm00001eb199620_P001 ... Zm00001eb308740_P001, Zm00001eb308760_P001, Zm00001eb308770_P001
Poaceae	Zoysia japonica	4	nbis-gene-28761, nbis-gene-28762, nbis-gene-28763 ... nbis-gene-54306
Poaceae	Zoysia macrostachya	1	Zma_g29695
Portulacaceae	Portulaca oleracea	3	evm.TU.Contig10.6, evm.TU.LG06.813, evm.TU.LG09.1790
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g09970
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1606
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-20351, nbisL1-mrna-20553, nbisL1-mrna-8724
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-410
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15086
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.881, evm.TU.utg000018l.57
Rhizophoraceae	Kandelia obovata	2	Maker00003322, Maker00009225
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-22350, nbisL1-mrna-9400
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-22669, nbisL1-mrna-4662
Salicaceae	Populus euphratica	4	populus_peu05090, populus_peu05091, populus_peu05100 ... populus_peu26934
Solanaceae	Lycium barbarum	2	gene-LOC132606556, gene-LOC132628016
Solanaceae	Solanum chilense	2	SOLCI003128000, SOLCI005420600
Solanaceae	Solanum pennellii	2	gene-LOC107002274, gene-LOC107032693
Tamaricaceae	Reaumuria soongarica	2	gene_16920, gene_2212
Tamaricaceae	Tamarix chinensis	2	TC03G0230, TC06G0426
Zosteraceae	Zostera marina	1	Zosma03g14480.v3.1