Basic Information
Locus ID:
Oco05G002780
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 2591951 | 2592906 | - | Oco05G002780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 31,959.76 Da | 44.12 | 83.15 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 149 | 183 | 4.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 144 | 0.0033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 106 | 274 | 1.98E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 91 | 285 | 7.7E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 107 | 144 | 0.0074 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 275 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 184 | 2.7E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 153 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 154 | 184 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 147 | 9.467419 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 131 | 145 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 4.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 222 | 236 | 4.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 131 | 145 | 4.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006651037.1 | zinc finger CCCH domain-containing protein 48-like [Oryza brachyantha] | 0 |
| TrEMBL | A0A0E0CV67 | C3H1-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology