Basic Information
Locus ID:
Oco04G026280
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 29577086 | 29583382 | + | Oco04G026280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 85,312.11 Da | 65.17 | 66.79 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 701 | 741 | 5.99481E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 699 | 746 | 8.9E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 701 | 747 | 1.68E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 686 | 752 | 5.3E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 702 | 741 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 489 | - | - |
| Coils | Coil | Coil | 461 | 481 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052142123.1 | uncharacterized protein LOC127761832 isoform X2 [Oryza glaberrima] | 0 |
| TrEMBL | A0A6G1FCI6 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025691 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology