Basic Information
Locus ID:
Oco04G026230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 29540444 | 29545603 | + | Oco04G026230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 94,419.89 Da | 53.23 | 78.38 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 34 | 189 | 7.88674E-41 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 779 | 820 | 6.94332E-23 | - |
| Pfam | PF00069 | Protein kinase domain | 496 | 699 | 4.9E-27 | IPR000719 |
| Pfam | PF04564 | U-box domain | 776 | 843 | 1.2E-15 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 51 | 154 | 7.33E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 768 | 845 | 6.62E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 474 | 733 | 1.64E-42 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 774 | 850 | 4.1E-25 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 467 | 561 | 4.1E-18 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 37 | 164 | 6.3E-6 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 562 | 759 | 1.0E-25 | - |
| SMART | SM00504 | Ubox_2 | 778 | 841 | 8.8E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 774 | 848 | 32.881233 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 489 | 780 | 24.795996 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 255 | - | - |
| Coils | Coil | Coil | 334 | 398 | - | - |
| Coils | Coil | Coil | 413 | 447 | - | - |
| Coils | Coil | Coil | 287 | 307 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_052141944.1 | U-box domain-containing protein 33-like isoform X1 [Oryza glaberrima] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0K729 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |