Basic Information
Locus ID:
Oco04G025520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 29008699 | 29020193 | - | Oco04G025520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 88,007.50 Da | 44.23 | 69.94 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 524 | 801 | 3.48085E-60 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 687 | 718 | 0.0071 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 7.8E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 558 | 594 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 552 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 602 | 638 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 767 | 801 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 511 | 801 | 4.83E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 653 | 801 | 2.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 506 | 652 | 7.6E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 513 | 552 | 4.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 760 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 6.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 718 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 801 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 598 | 638 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 677 | 35.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0017 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 594 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 687 | 727 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 605 | 647 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 605 | 640 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 594 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.402442 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 561 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 769 | 801 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 769 | 801 | 12.914561 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 411 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
| Coils | Coil | Coil | 366 | 394 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_052143429.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Oryza glaberrima] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F9A3 | LisH domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology