Basic Information
Locus ID:
Oco04G024740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 28252435 | 28261642 | - | Oco04G024740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 161,630.66 Da | 44.20 | 89.35 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13980 | STKc_Vps15 | 16 | 304 | 1.0805E-159 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 1036 | 1072 | 4.6E-6 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 71 | 293 | 1.8E-19 | IPR000719 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1037 | 1448 | 7.83E-32 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 26 | 297 | 1.05E-35 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 502 | 836 | 2.56E-31 | IPR016024 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 110 | 299 | 8.8E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 495 | 618 | 3.0E-7 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 1082 | 1235 | 5.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1026 | 1081 | 4.2E-8 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 624 | 838 | 9.8E-18 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 1250 | 1450 | 7.6E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1083 | 1120 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1033 | 1072 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1405 | 1450 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1181 | 1222 | 1.2 | IPR001680 |
| SMART | SM00220 | serkin_6 | 27 | 304 | 3.9E-11 | IPR000719 |
| SMART | SM00320 | WD40_4 | 1311 | 1355 | 51.0 | IPR001680 |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 542 | 580 | 8.8874 | IPR021133 |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 708 | 746 | 8.5502 | IPR021133 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1437 | 1450 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1040 | 1074 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1040 | 1074 | 12.024679 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 312 | 21.658247 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1417 | 1450 | 9.810144 | - |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 146 | 158 | - | IPR008271 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1437 | 1450 | 8.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1342 | 1356 | 8.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1059 | 1073 | 8.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 656 | - | - |
| Coils | Coil | Coil | 66 | 86 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29380.1 | protein kinase family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_040376402.1 | serine/threonine-protein kinase VPS15 [Oryza brachyantha] | 0 |
| Q9M0E5 | Serine/threonine-protein kinase VPS15 OS=Arabidopsis thaliana OX=3702 GN=VPS15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F2N0 | non-specific serine/threonine protein kinase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002461 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31661 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014666 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25085, Sbi_jg8931 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19665 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007712, GOSA_00014470 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42324, Sgl42361, Sgl47098 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010407, gene:ENSEOMG00000032907 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0016740, CQ.Regalona.r1.8AG0019210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257460 |
| Apiaceae | Apium graveolens | 5 | Ag5G01593, Ag5G01594, Ag5G01595, Ag5G01596, Ag8G00324 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724252 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.775.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G10793 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29380.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024212m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27250.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1569 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1628 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19760 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0353s00010.v1.0, Dusal.0353s00013.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02000 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1291, evm.TU.LG07.1165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039668 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G26415, Lb5G26416, Lb5G26417 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3788, BH07.3608, CH07.3684 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149040, gene-QOZ80_2BG0205210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0624570.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024280, Oco04G024740 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g55340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G188700, gene-BS78_04G166200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206297 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G017650, Chr13G001830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G640500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG053930, gene_TRIDC6BG062800 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G360100.2, TraesCS6B02G393000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192340_P002, Zm00001eb257890_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8425 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14626 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2791, evm.TU.LG03.2042, evm.TU.LG14.343 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1891 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25694 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15219 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4667 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1078 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001255 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14804 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1178 |
| Salicaceae | Populus euphratica | 1 | populus_peu09190 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613469 |
| Solanaceae | Solanum chilense | 1 | SOLCI005936100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017746 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8037 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G1503, TC12G1319 |
| Zosteraceae | Zostera marina | 2 | Zosma01g16780.v3.1, Zosma04g25780.v3.1 |