Basic Information
Locus ID:
Oco04G024470
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 28004972 | 28009401 | + | Oco04G024470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 53,407.61 Da | 52.92 | 84.48 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 281 | 1.4E-8 | IPR020683 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 103 | 4.8E-13 | - |
| Pfam | PF00023 | Ankyrin repeat | 181 | 208 | 4.3E-6 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 1.38E-50 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 375 | 6.77E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 154 | 3.8E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 163 | 298 | 2.6E-28 | IPR036770 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.1E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 367 | 0.0025 | IPR001841 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 3.9E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 1300.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 930.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.018 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 368 | 9.804232 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.79626 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.842607 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.7794 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.04838 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.89137 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.178679 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 205 | 12.434492 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.091537 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 1.5E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 1.5E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_015689599.1 | probable E3 ubiquitin-protein ligase XBOS32 [Oryza brachyantha] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1F2J5 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology