Basic Information
Locus ID:
Oco04G023350
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 26772211 | 26773159 | + | Oco04G023350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 33,781.96 Da | 74.77 | 58.51 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 170 | 212 | 1.12165E-25 | - |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 7.7E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 170 | 212 | 2.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 218 | 1.13E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 217 | 3.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 211 | 5.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 212 | 12.356501 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040376855.1 | E3 ubiquitin-protein ligase RZF1-like [Oryza brachyantha] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K5N4 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology