Basic Information
Locus ID:
Oco04G021730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 25287797 | 25289155 | - | Oco04G021730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 48,315.21 Da | 51.03 | 94.18 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 46 | 87 | 2.18528E-20 | - |
| Pfam | PF04564 | U-box domain | 42 | 113 | 1.5E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 164 | 439 | 4.53E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 116 | 7.46E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 133 | 439 | 3.4E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 115 | 4.6E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 45 | 108 | 8.6E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 41 | 115 | 32.890079 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_006647860.3 | U-box domain-containing protein 21-like [Oryza brachyantha] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | J3LGW4 | RING-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology