Basic Information
Locus ID:
Oco04G021440
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 25040982 | 25046410 | + | Oco04G021440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 79,886.43 Da | 52.57 | 100.78 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 368 | 410 | 2.03103E-28 | - |
| Pfam | PF04564 | U-box domain | 364 | 434 | 7.2E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 488 | 526 | 2.4E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 571 | 609 | 5.3E-7 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 457 | 734 | 3.84E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 358 | 438 | 1.02E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 361 | 437 | 6.8E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 553 | 737 | 7.3E-29 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 442 | 552 | 1.8E-21 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 367 | 430 | 1.1E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 695 | 735 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 528 | 568 | 62.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 569 | 610 | 2.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 653 | 693 | 58.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 487 | 527 | 6.2E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 611 | 652 | 18.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 498 | 540 | 14.2274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 581 | 623 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 363 | 437 | 44.345261 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 36 | - | - |
| Coils | Coil | Coil | 230 | 250 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23030.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_006649017.2 | U-box domain-containing protein 11-like [Oryza brachyantha] | 0 |
| Q8GUG9 | U-box domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUB11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0K4W1 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35008, jg5192, jg7314 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18581 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025332 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144830 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12914, Sbi_jg52950, Sbi_jg52951 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8905 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009008 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl31132, Sgl32514, Sgl32515, Sgl36486, Sgl37776, Sgl37777 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002705, gene:ENSEOMG00000003094 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012350, CQ.Regalona.r1.6BG0012950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217060 |
| Apiaceae | Apium graveolens | 4 | Ag11G03910, Ag5G01966, Ag6G00551, Ag8G01841 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G010220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695610 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.500.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G03791, Ftri8G13159 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G23030.1, AT1G71020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007104m.g.v1.0, Thhalv10018269m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g20480.v2.2, Sp5g26190.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g030610.2N, BniB03g048920.2N, BniB04g038270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0910 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0986 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1412 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021569 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01465, Lb2G13229 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3353, BH07.3179, CH07.3239 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0144450, gene-QOZ80_2BG0199920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0612510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025079 |
| Poaceae | Oryza coarctata | 2 | Oco03G020820, Oco04G021440 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g49950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G267000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203429 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G020900, Chr13G005150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G533800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG044730, gene_TRIDC6BG052360 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G293600.1, TraesCS6B02G324000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21941, nbis-gene-21942 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17081 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.827, evm.TU.LG21.485 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g00600 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.162, evm.TU.Scaffold_17_RagTag.829 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23543 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11779, nbisL1-mrna-16846 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17499 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.104, evm.TU.utg000013l.465 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004452, Maker00004586 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10858, nbisL1-mrna-11620 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14209, nbisL1-mrna-2766 |
| Salicaceae | Populus euphratica | 2 | populus_peu07148, populus_peu21130 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613646, gene-LOC132641621 |
| Solanaceae | Solanum chilense | 2 | SOLCI005517900, SOLCI005631600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017697, gene-LOC107020839 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9235_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1243, TC11G1005 |