Basic Information
Locus ID:
Oco04G021290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 24908605 | 24915286 | + | Oco04G021290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 23,368.55 Da | 52.09 | 88.41 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 134 | 177 | 3.06106E-15 | - |
| Pfam | PF13639 | Ring finger domain | 134 | 177 | 5.5E-11 | IPR001841 |
| Pfam | PF17123 | RING-like zinc finger | 56 | 85 | 2.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 94 | 1.06E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 182 | 5.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 98 | 6.8E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 182 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 57 | 126 | 0.0091 | IPR001841 |
| SMART | SM00184 | ring_2 | 135 | 176 | 7.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 177 | 12.046688 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_015625449.1 | RING-H2 finger protein ATL40 [Oryza sativa Japonica Group] | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D9VKK4 | RING-type E3 ubiquitin transferase OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology