Basic Information
Locus ID:
Oco04G019790
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 23497519 | 23500202 | + | Oco04G019790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 55,126.12 Da | 52.27 | 77.57 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 218 | 480 | 6.39958E-41 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 245 | 304 | 2.6E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 416 | 0.0059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 362 | 9.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 480 | 6.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 210 | 483 | 1.1E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 155 | 483 | 3.1E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 323 | 362 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 319 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 416 | 6.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 480 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 1.7E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 371 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 364 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 448 | 481 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 283 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 481 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 467 | 481 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 349 | 363 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_052145059.1 | cell division cycle 20.2, cofactor of APC complex-like [Oryza glaberrima] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0GBQ7 | ANAPC4_WD40 domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology