Basic Information
Locus ID:
Oco04G019520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 23301403 | 23304732 | - | Oco04G019520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 43,281.85 Da | 36.13 | 67.04 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 40 | 98 | 2.0E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 29 | 113 | 5.43E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 31 | 105 | 3.3E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 37 | 106 | 2.8E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 110 | 11.468789 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 395 | - | - |
| Coils | Coil | Coil | 326 | 346 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_006647726.1 | binding partner of ACD11 1-like [Oryza brachyantha] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | J3LG27 | RRM domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology