Basic Information
Locus ID:
Oco04G019350
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 23111084 | 23112302 | + | Oco04G019350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 41,343.57 Da | 45.65 | 110.76 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 7 | 41 | 5.3E-9 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 41 | 6.09E-13 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 152 | 374 | 5.38E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 64 | 4.0E-14 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 380 | 1.2E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 85 | 3.9E-4 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 87 | 12.288443 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 73 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015624765.1 | E3 ubiquitin-protein ligase PUB23 [Oryza sativa Japonica Group] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | J3LG09 | RING-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 GN=102720116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1706, jg29115 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30001010 |
| Apiaceae | Apium graveolens | 1 | Ag1G00349 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G004100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711824 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1718.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G25469, Ftri16G33272 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g01710, gene.Cymno18g04500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g03570 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032587 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.3056, AH09.2109, BH07.2881, BH09.2278, CH09.2421 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0141530, gene-QOZ80_2BG0197120 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0196950.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006648, gene-QYE76_024482, gene-QYE76_040120 |
| Poaceae | Oryza coarctata | 3 | Oco03G018620, Oco04G019350, Oco07G014460 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g12410.1, LOC_Os02g46500.1, LOC_Os04g49970.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G233000, gene-BS78_06G208300 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G004740, Chr09G023080, Chr15G006220, Chr23G003090 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G764200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG064310, gene_TRIDC2BG068630 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G450300.1.cds1, TraesCS2B02G471900.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb072440_P002, Zm00001eb251170_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22207, nbis-gene-22699, nbis-gene-5698 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g14169, Zma_g16913, Zma_g16914, Zma_g20330, Zma_g21879 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.13, evm.TU.Scaffold_18_RagTag.153 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28399, nbisL1-mrna-7117 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14534, nbisL1-mrna-19030 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000005l.150, add.evm.TU.utg000034l.15 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16863 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22106 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599911 |
| Solanaceae | Solanum chilense | 1 | SOLCI004379300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029725 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05420.v3.1 |