Basic Information
Locus ID:
Oco04G019000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
BRH1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 22675139 | 22676175 | - | Oco04G019000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 22,782.25 Da | 57.66 | 105.55 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 113 | 156 | 3.60591E-14 | - |
| Pfam | PF13639 | Ring finger domain | 112 | 156 | 6.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 162 | 3.53E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 162 | 1.6E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 112 | 156 | 0.0088 | IPR011016 |
| SMART | SM00184 | ring_2 | 113 | 155 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 156 | 12.356501 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_040377011.1 | brassinosteroid-responsive RING protein 1-like [Oryza brachyantha] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1F8J4 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_017045 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology