Basic Information
Locus ID:
Oco04G018850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 22537637 | 22544150 | + | Oco04G018850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 46,810.54 Da | 28.65 | 73.75 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 299 | 0.015 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 112 | 132 | 2.0E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 338 | 0.0095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 178 | 8.7E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 141 | 427 | 2.84E-46 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 109 | 133 | 2.35E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 203 | 1.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 207 | 434 | 9.1E-37 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 105 | 137 | 5.0E-6 | - |
| SMART | SM00320 | WD40_4 | 262 | 299 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 255 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 386 | 44.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.57 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 110 | 134 | 0.0036 | IPR000571 |
| SMART | SM00320 | WD40_4 | 389 | 426 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 339 | 2.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 308 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 9.826258 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 178 | 11.260138 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 108 | 135 | 14.154633 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 302 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 14.117617 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 340 | 1.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 1.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 1.2E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_006647681.1 | zinc finger CCCH domain-containing protein 17 [Oryza brachyantha] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | J3LFU4 | Zinc finger CCCH domain-containing protein 48 OS=Oryza brachyantha OX=4533 GN=102711672 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology