Basic Information
Locus ID:
Oco04G018320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 21879309 | 21884456 | + | Oco04G018320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 105,434.46 Da | 50.47 | 80.97 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 44 | 200 | 1.98651E-34 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 854 | 893 | 6.09983E-16 | - |
| Pfam | PF04564 | U-box domain | 856 | 919 | 1.9E-10 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 622 | 783 | 8.9E-17 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 606 | 844 | 1.5E-34 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 859 | 919 | 4.94E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 855 | 922 | 1.9E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 595 | 689 | 2.8E-19 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 43 | 192 | 9.6E-6 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 691 | 854 | 1.0E-16 | - |
| SMART | SM00504 | Ubox_2 | 856 | 914 | 8.3E-13 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 859 | 921 | 16.109785 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 617 | 901 | 19.170664 | IPR000719 |
| Coils | Coil | Coil | 389 | 423 | - | - |
| Coils | Coil | Coil | 511 | 531 | - | - |
| Coils | Coil | Coil | 574 | 601 | - | - |
| Coils | Coil | Coil | 539 | 566 | - | - |
| Coils | Coil | Coil | 474 | 508 | - | - |
| Coils | Coil | Coil | 323 | 357 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_025878556.1 | U-box domain-containing protein 33-like [Oryza sativa Japonica Group] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A2X833 | Serine/threonine-protein kinase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_08387 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |