Basic Information
Locus ID:
Oco04G018310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 21867694 | 21873169 | + | Oco04G018310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 101,441.69 Da | 49.51 | 77.52 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 48 | 203 | 1.2937E-43 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 827 | 868 | 5.49166E-23 | - |
| Pfam | PF04564 | U-box domain | 824 | 894 | 2.4E-15 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 534 | 767 | 7.9E-45 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 820 | 897 | 3.09E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 508 | 790 | 6.47E-68 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 48 | 166 | 4.27E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 47 | 192 | 1.6E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 512 | 604 | 7.3E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 605 | 804 | 2.3E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 823 | 900 | 3.5E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 826 | 889 | 4.5E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 532 | 801 | 5.3E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 532 | 801 | 36.428276 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 822 | 896 | 31.642836 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 650 | 662 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 538 | 559 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 294 | - | - |
| Coils | Coil | Coil | 386 | 406 | - | - |
| Coils | Coil | Coil | 463 | 504 | - | - |
| Coils | Coil | Coil | 362 | 382 | - | - |
| Coils | Coil | Coil | 414 | 448 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_006647651.2 | U-box domain-containing protein 33-like isoform X1 [Oryza brachyantha] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D9VJ79 | RING-type E3 ubiquitin transferase OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology