Basic Information
Locus ID:
Oco04G018210
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Beach domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 21733642 | 21759260 | - | Oco04G018210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 313,042.22 Da | 49.45 | 89.61 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 1985 | 2095 | 6.84313E-25 | IPR023362 |
| CDD | cd06071 | Beach | 2122 | 2399 | 1.08793E-140 | IPR000409 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 1995 | 2094 | 9.9E-29 | IPR023362 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2555 | 2584 | 7.7E-7 | IPR001680 |
| Pfam | PF15787 | Domain of unknown function (DUF4704) | 568 | 848 | 1.1E-45 | IPR031570 |
| Pfam | PF02138 | Beige/BEACH domain | 2123 | 2399 | 3.0E-111 | IPR000409 |
| SUPERFAMILY | SSF50729 | PH domain-like | 1985 | 2095 | 1.78E-21 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2529 | 2837 | 1.96E-30 | IPR036322 |
| SUPERFAMILY | SSF81837 | BEACH domain | 2109 | 2399 | 1.83E-119 | IPR036372 |
| Gene3D | G3DSA:2.130.10.10 | - | 2481 | 2851 | 2.1E-27 | IPR015943 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2111 | 2399 | 1.6E-130 | IPR036372 |
| Gene3D | G3DSA:2.30.29.30 | - | 1985 | 2094 | 1.3E-29 | IPR011993 |
| SMART | SM00320 | WD40_4 | 2546 | 2585 | 4.9E-8 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2122 | 2399 | 1.5E-179 | IPR000409 |
| SMART | SM00320 | WD40_4 | 2634 | 2673 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2798 | 2838 | 0.56 | IPR001680 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 1982 | 2095 | 31.34885 | IPR023362 |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2110 | 2399 | 112.847618 | IPR000409 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2553 | 2594 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2553 | 2587 | 11.629227 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2609 | 2624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1300 | 1320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2589 | 2624 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45540.1 | WD-40 repeat family protein / beige-related. | 0 |
| RefSeq | XP_015689566.2 | BEACH domain-containing protein C2-like [Oryza brachyantha] | 0 |
| F4IG73 | BEACH domain-containing protein C2 OS=Arabidopsis thaliana OX=3702 GN=BCHC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F1W4 | DUF4704 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_036387 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1846, jg1847, jg1848, jg29278 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1369 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023141 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4367, Sbi_jg49460 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5780 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000325 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11229, Sgl11230, Sgl16624, Sgl16625 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016088, gene:ENSEOMG00000032260 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0005980, CQ.Regalona.r1.2BG0023740 |
| Apiaceae | Apium graveolens | 2 | Ag5G01122, Ag6G01646 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011840, COCNU_10G008780, COCNU_10G008810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718064 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.941.V1.1, AsparagusV1_07.1419.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G02178, Ftri7G23688 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G45540.2, AT3G60920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001277m.g.v1.0, Thhalv10005733m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g27560.v2.2, Sp5g02330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g004010.2N, BniB06g062260.2N, BniB08g075190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0494 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0165s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.218 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040463 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10536, Lb2G10543 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.1873, BH07.2728, BH09.2042, CH07.2801, CH09.2184 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0140040, gene-QOZ80_4AG0307900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0188960.1, HORVU.MOREX.r3.6HG0601780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024206, gene-QYE76_045451 |
| Poaceae | Oryza coarctata | 2 | Oco04G018210, Oco08G012370 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g44380.2, LOC_Os04g46892.1, LOC_Os04g46894.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G221800, gene-BS78_06G185000 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0205946, Pt_Chr0206468, Pt_Chr0301732, Pt_Chr0502277 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G024100, Chr0G020220, Chr15G007290, Chr23G006890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G701000, Tel6E01G464300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG062500, gene_TRIDC6AG038120 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G410800.1, TraesCS2B02G429600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb074430_P001, Zm00001eb249850_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37298 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14071, Zma_g20204 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2375, evm.TU.LG19.824, evm.TU.LG24.823 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.378 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21723 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15720 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7126, nbisL1-mrna-7127 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.313 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6871 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12712 |
| Salicaceae | Populus euphratica | 4 | populus_peu27817, populus_peu31759, populus_peu31760 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645621 |
| Solanaceae | Solanum chilense | 1 | SOLCI004363100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032398 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_822 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2698 |
| Zosteraceae | Zostera marina | 1 | Zosma03g27140.v3.1 |