Basic Information
Locus ID:
Oco04G017190
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 20691810 | 20693438 | + | Oco04G017190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 59,746.34 Da | 63.36 | 64.15 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 467 | 531 | 2.54152E-7 | - |
| CDD | cd14273 | UBA_TAP-C_like | 10 | 41 | 8.27235E-8 | - |
| CDD | cd02958 | UAS | 253 | 371 | 2.24702E-36 | - |
| Pfam | PF00789 | UBX domain | 462 | 529 | 3.3E-6 | IPR001012 |
| Pfam | PF13899 | Thioredoxin-like | 257 | 314 | 1.1E-7 | - |
| Pfam | PF14555 | UBA-like domain | 5 | 47 | 1.1E-11 | - |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 236 | 370 | 4.03E-21 | IPR036249 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 454 | 541 | 1.14E-11 | IPR029071 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 256 | 372 | 5.7E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 456 | 540 | 1.4E-5 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 2 | 45 | 4.6E-7 | - |
| SMART | SM00594 | 45neu3 | 241 | 367 | 9.6E-8 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 461 | 539 | 12.465124 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 214 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.3 | UBX domain-containing protein. | 0 |
| RefSeq | XP_040377311.1 | plant UBX domain-containing protein 7-like [Oryza brachyantha] | 0 |
| P0DKI4 | Putative plant UBX domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUX14 PE=5 SV=1 | 0 | |
| TrEMBL | A0A0D3F840 | UBX domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.861, AH07.2773, BH03.985, BH07.2584, CH07.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0138910, gene-QOZ80_2BG0194560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0117420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007415, gene-QYE76_023963, gene-QYE76_023966 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G017190, Oco13G005150, Oco14G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G208100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G013060, Chr09G024940, Chr09G024970, Chr15G015460 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG020080, gene_TRIDC6AG036470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G133200.1.cds1, TraesCS2B02G156700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb185740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27667, nbis-gene-9357 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13983 |