Basic Information
Locus ID:
Oco04G017120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 20637590 | 20648492 | - | Oco04G017120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 27,098.61 Da | 67.07 | 65.42 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 19 | 75 | 1.45848E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 21 | 73 | 1.3E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 86 | 9.94E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 87 | 8.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 21 | 73 | 3.5E-10 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 74 | 12.223724 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 156 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040376694.1 | E3 ubiquitin-protein ligase RMA1H1-like [Oryza brachyantha] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F4A9 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_005698 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology