Basic Information
Locus ID:
Oco04G017050
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 20594655 | 20603097 | + | Oco04G017050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 104,186.97 Da | 52.83 | 79.57 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 359 | 4.0E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 700 | 759 | 8.7E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 822 | 898 | 2.48E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 385 | 3.09E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 698 | 760 | 6.45E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 820 | 893 | 2.5E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 127 | 388 | 1.9E-24 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 696 | 777 | 1.4E-7 | - |
| SMART | SM00358 | DRBM_3 | 696 | 760 | 2.7E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 822 | 888 | 0.17 | IPR014720 |
| SMART | SM00577 | forpap2 | 194 | 368 | 1.5E-12 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 821 | 889 | 9.392092 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 695 | 761 | 10.872946 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 384 | 16.466848 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 543 | - | - |
| Coils | Coil | Coil | 742 | 762 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_052142845.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Oryza glaberrima] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3F819 | protein-serine/threonine phosphatase OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology