Basic Information
Locus ID:
Oco04G017040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 20585802 | 20591571 | + | Oco04G017040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 86,722.44 Da | 51.98 | 68.68 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 315 | 638 | 1.85767E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 467 | 503 | 7.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 425 | 460 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 348 | 2.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 312 | 665 | 2.0E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 391 | 687 | 1.1E-45 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 273 | 368 | 7.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 423 | 461 | 4.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 503 | 8.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 544 | 0.89 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 638 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 349 | 5.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 596 | 9.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 430 | 470 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 504 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 430 | 464 | 10.759232 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 470 | 504 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 317 | 350 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 358 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 336 | 350 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 448 | 462 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 336 | 350 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 490 | 504 | 1.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 725 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_052143644.1 | uncharacterized protein LOC127763091 [Oryza glaberrima] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9VIR5 | WD_REPEATS_REGION domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology