halophFGD

Basic Information

Locus ID: Oco04G016030

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG04	19639145	19642118	-	Oco04G016030

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.64	62,107.40 Da	59.16	66.45	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	74	552	1.69E-35	IPR036322
Gene3D	G3DSA:2.130.10.10	-	358	555	2.6E-11	IPR015943
Gene3D	G3DSA:2.130.10.10	-	261	357	2.3E-6	IPR015943
Gene3D	G3DSA:2.130.10.10	-	65	200	1.6E-5	IPR015943
SMART	SM00320	WD40_4	371	409	14.0	IPR001680
SMART	SM00320	WD40_4	148	189	37.0	IPR001680
SMART	SM00320	WD40_4	315	351	90.0	IPR001680
SMART	SM00320	WD40_4	413	467	13.0	IPR001680
SMART	SM00320	WD40_4	68	107	8.8	IPR001680
SMART	SM00320	WD40_4	517	554	4.7	IPR001680
SMART	SM00320	WD40_4	261	300	0.5	IPR001680
PIRSF	PIRSF037309	PPA2_B55	46	555	1.0E-145	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	524	553	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	440	466	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	300	327	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	386	413	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	328	356	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	272	299	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	414	439	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	86	106	2.5E-96	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	165	193	2.5E-96	IPR000009
MobiDBLite	mobidb-lite	consensus disorder prediction	1	27	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G51690.2	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA,
RefSeq	XP_052143757.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like isoform X2 [Oryza glaberrima]
Swiss-Prot	Q38821	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2
TrEMBL	A0A0D9YV09	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Oryza glumipatula OX=40148 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13574, jg18075, jg18764, jg25258
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13182, gene_21265
Amaranthaceae	Atriplex hortensis	2	Ah011387, Ah034602
Amaranthaceae	Beta vulgaris	2	BVRB_2g033360, BVRB_9g211380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11876, Sbi_jg46797
Amaranthaceae	Salicornia europaea	1	Seu_jg21101
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020959
Amaranthaceae	Suaeda glauca	2	Sgl80203, Sgl82652
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016771, gene:ENSEOMG00000017072 ... gene:ENSEOMG00000019315, gene:ENSEOMG00000037230, gene:ENSEOMG00000051526, gene:ENSEOMG00000052976
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0014560, CQ.Regalona.r1.2BG0016560 ... CQ.Regalona.r1.9AG0011190, CQ.Regalona.r1.9BG0011270
Anacardiaceae	Pistacia vera	3	pistato.v30116380, pistato.v30139490, pistato.v30254480
Apiaceae	Apium graveolens	5	Ag4G00186, Ag4G00187, Ag5G00697, Ag5G00891, Ag6G01410
Arecaceae	Cocos nucifera	5	COCNU_02G001610, COCNU_03G014860, COCNU_05G010850 ... COCNU_06G005110, COCNU_14G003240
Arecaceae	Phoenix dactylifera	8	gene-LOC103702009, gene-LOC103703801, gene-LOC103709550 ... gene-LOC103711232, gene-LOC103721824, gene-LOC113462214, gene-LOC120107243, gene-LOC120109337
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.295.V1.1, AsparagusV1_05.2915.V1.1 ... AsparagusV1_06.558.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G25207, Ftri13G15029, Ftri18G18631, Ftri1G11803 ... Ftri3G32009, Ftri4G06019, Ftri4G25630, Ftri8G24664
Brassicaceae	Arabidopsis thaliana	2	AT1G17720.1, AT1G51690.3
Brassicaceae	Eutrema salsugineum	3	Thhalv10007406m.g.v1.0, Thhalv10011420m.g.v1.0 ... Thhalv10020527m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15810.v2.2, Sp1g38330.v2.2, Sp3g19300.v2.2
Brassicaceae	Brassica nigra	8	BniB01g042070.2N, BniB03g007210.2N, BniB03g027760.2N ... BniB04g032070.2N, BniB04g058240.2N, BniB06g029070.2N, BniB07g004100.2N, BniB07g049970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0891, Ceq03G1657, Ceq03G2248, Ceq04G1961
Casuarinaceae	Casuarina glauca	3	Cgl02G0904, Cgl03G2385, Cgl04G2148
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g11750, gene.Cymno06g05450, gene.Cymno12g02800 ... gene.Cymno16g03380
Dunaliellaceae	Dunaliella salina	1	Dusal.0038s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34590, gene.Thate09g07390, gene.Thate09g07950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7468, nbisL1-mrna-794
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.24, evm.TU.LG07.888, evm.TU.LG10.720
Plantaginaceae	Plantago ovata	3	Pov_00015237, Pov_00022145, Pov_00025792
Plumbaginaceae	Limonium bicolor	4	Lb1G05140, Lb2G14900, Lb3G20071, Lb4G26300
Poaceae	Echinochloa crus-galli	9	AH02.2233, AH06.2044, AH07.892, BH02.2336, BH06.1884 ... BH07.1019, CH02.2509, CH06.2065, CH07.773
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0023420, gene-QOZ80_1BG0073940 ... gene-QOZ80_2AG0137550, gene-QOZ80_2BG0193180, gene-QOZ80_6AG0543070, gene-QOZ80_6BG0496290
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0269870.1, HORVU.MOREX.r3.6HG0580090.2 ... HORVU.MOREX.r3.7HG0717590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_021739, gene-QYE76_034512, gene-QYE76_053613
Poaceae	Oryza coarctata	7	Oco01G013920, Oco02G014170, Oco03G005890, Oco04G006120 ... Oco04G016030, Oco11G011280, Oco12G011400
Poaceae	Oryza sativa	3	LOC_Os01g41630.1, LOC_Os02g13110.2, LOC_Os06g36770.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G184700, gene-BS78_04G198300 ... gene-BS78_10G168300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0400470, Pt_Chr0400486, Pt_Chr0603201, Pt_Chr0603229 ... Pt_Chr0605368
Poaceae	Sporobolus alterniflorus	8	Chr02G016220, Chr02G029070, Chr03G010390, Chr05G006690 ... Chr05G017690, Chr08G010610, Chr10G016550, Chr11G005850
Poaceae	Thinopyrum elongatum	3	Tel3E01G370800, Tel6E01G369600, Tel7E01G622500
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG032040, gene_TRIDC3BG036680 ... gene_TRIDC6AG027410, gene_TRIDC6BG033560, gene_TRIDC7AG050180, gene_TRIDC7BG043590
Poaceae	Triticum aestivum	9	TraesCS3A02G214500.2, TraesCS3B02G245100.2 ... TraesCS3D02G217100.1, TraesCS6A02G187800.4, TraesCS6B02G216800.3, TraesCS6D02G178300.6, TraesCS7A02G358700.1, TraesCS7B02G268700.1, TraesCS7D02G364000.2
Poaceae	Zea mays	7	Zm00001eb161320_P002, Zm00001eb205080_P004 ... Zm00001eb243780_P001, Zm00001eb247180_P001, Zm00001eb336600_P001, Zm00001eb357700_P001, Zm00001eb384150_P001
Poaceae	Zoysia japonica	4	nbis-gene-10208, nbis-gene-29332, nbis-gene-29588 ... nbis-gene-9474
Poaceae	Zoysia macrostachya	3	Zma_g10605, Zma_g30709, Zma_g8167
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.2332, evm.TU.LG07.1096, evm.TU.LG07.1615 ... evm.TU.LG07.1616, evm.TU.LG15.1740, evm.TU.LG15.1745
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g19380, gene.Posoc03g21650, gene.Posoc09g06070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1347 ... evm.TU.Scaffold_11_RagTag.1038, evm.TU.Scaffold_18_RagTag.648
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14718, nbisL1-mrna-27761, nbisL1-mrna-7075
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15516, nbisL1-mrna-5019, nbisL1-mrna-8075
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12601, nbisL1-mrna-8030, nbisL1-mrna-8773
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.67, evm.TU.utg000010l.123 ... evm.TU.utg000023l.72
Rhizophoraceae	Kandelia obovata	3	Maker00004088, Maker00008919, Maker00018738
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16447, nbisL1-mrna-734, nbisL1-mrna-7404
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17923, nbisL1-mrna-24322, nbisL1-mrna-8675
Salicaceae	Populus euphratica	6	populus_peu02604, populus_peu04981, populus_peu12674 ... populus_peu28666, populus_peu33506, populus_peu33509
Solanaceae	Lycium barbarum	4	gene-LOC132601443, gene-LOC132603710, gene-LOC132633450 ... gene-LOC132645676
Solanaceae	Solanum chilense	4	SOLCI003840200, SOLCI004096800, SOLCI005557600 ... SOLCI007425100
Solanaceae	Solanum pennellii	4	gene-LOC107007484, gene-LOC107015339, gene-LOC107021207 ... gene-LOC107023835
Tamaricaceae	Reaumuria soongarica	3	gene_10029, gene_3154, gene_3739
Tamaricaceae	Tamarix chinensis	3	TC01G2513, TC08G1710, TC10G2106
Zosteraceae	Zostera marina	4	Zosma05g12250.v3.1, Zosma05g25390.v3.1, Zosma06g00630.v3.1 ... Zosma06g11380.v3.1