Basic Information
Locus ID:
Oco04G015710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 19295736 | 19302126 | - | Oco04G015710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 82,447.61 Da | 38.57 | 68.06 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 505 | 549 | 0.00577147 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 65 | 235 | 1.49E-5 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 502 | 549 | 2.33E-8 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 500 | 550 | 3.2E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 449 | - | - |
| Coils | Coil | Coil | 432 | 452 | - | - |
| Coils | Coil | Coil | 718 | 745 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_006647503.1 | uncharacterized protein LOC102706164 [Oryza brachyantha] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A6G1EGV5 | Tudor domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008339 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology