Basic Information
Locus ID:
Oco04G014340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 18127423 | 18132747 | + | Oco04G014340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 81,877.29 Da | 37.27 | 86.61 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 356 | 659 | 2.42366E-163 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 339 | 0.0 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 361 | 655 | 2.2E-43 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 77 | 334 | 3.6E-5 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 339 | 4.71E-46 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 355 | 659 | 1.75E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 354 | 660 | 4.5E-51 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 339 | 2.5E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 340 | 31.877142 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 356 | 660 | 41.669983 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_015626632.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Oryza sativa Japonica Group] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A3A8H9 | glycerophosphodiester phosphodiesterase OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0588500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology