Basic Information
Locus ID:
Oco04G013550
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 17276060 | 17276986 | + | Oco04G013550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 21,369.92 Da | 66.83 | 70.94 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 103 | 131 | 8.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 131 | 2.61E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 159 | 6.9E-10 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 81 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015623318.1 | E3 ubiquitin-protein ligase EL5 [Oryza sativa Japonica Group] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0CM30 | RING-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology