Basic Information
Locus ID:
Oco04G013140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 16875425 | 16876509 | - | Oco04G013140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.65 | 32,224.26 Da | 97.87 | 71.36 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 180 | - | - |
| Coils | Coil | Coil | 186 | 206 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040376559.1 | E3 ubiquitin-protein ligase ATL6-like, partial [Oryza brachyantha] | 0 |
| TrEMBL | A0A0D9VHD4 | RING-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.2289, AH09.1175, BH06.2110, BH09.1276, CH07.2181 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0315720, gene-QOZ80_4BG0346710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0172140.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013370, gene-QYE76_024068, gene-QYE76_044350 |
| Poaceae | Oryza coarctata | 4 | Oco03G013260, Oco04G013140, Oco07G007180, Oco08G007090 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g36300.1, LOC_Os04g37730.1, LOC_Os12g10450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G115100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302550, Pt_Chr0504746 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G011920, Chr25G007850, Chr26G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G559300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG046230, gene_TRIDC2BG049170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G318200.1.cds1, TraesCS2B02G336300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb081330_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18749, nbis-gene-27038, nbis-gene-37715 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19798 |