Basic Information
Locus ID:
Oco04G013120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 16857046 | 16858516 | + | Oco04G013120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 37,963.03 Da | 79.64 | 69.38 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 154 | 197 | 3.59752E-17 | - |
| Pfam | PF13639 | Ring finger domain | 154 | 197 | 7.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 204 | 4.71E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 204 | 2.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 196 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 197 | 12.813844 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 352 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015689153.1 | E3 ubiquitin-protein ligase RING1-like [Oryza brachyantha] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1D244 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011463 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology