Basic Information
Locus ID:
Oco04G012320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 15911443 | 15912747 | - | Oco04G012320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 46,699.22 Da | 49.91 | 94.42 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 59 | 9.89941E-20 | - |
| Pfam | PF04564 | U-box domain | 8 | 86 | 1.5E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 91 | 5.59E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 128 | 401 | 1.15E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 89 | 3.4E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 427 | 1.1E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 11 | 82 | 4.8E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 89 | 34.305389 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_040376547.1 | E3 ubiquitin-protein ligase PUB23-like [Oryza brachyantha] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1FB15 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology