Basic Information
Locus ID:
Oco04G011850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CTR1
Description:
Ethylene-responsive protein kinase Le-CTR1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 15275036 | 15286280 | - | Oco04G011850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.26 | 15,810.32 Da | 30.16 | 88.34 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1 | 102 | 9.4E-29 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 106 | 3.24E-34 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 119 | 1.3E-39 | - |
| SMART | SM00220 | serkin_6 | 1 | 139 | 1.4E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 139 | 24.216501 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 73 | 85 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03730.1 | Protein kinase superfamily protein. Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed. | 0 |
| RefSeq | XP_047076979.1 | serine/threonine-protein kinase CTR1-like isoform X2 [Lolium rigidum] | 0 |
| Q05609 | Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6H9M0 | Serine/threonine-protein kinase CTR1 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d016675 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg15421, Sbi_jg20712, Sbi_jg40410, Sbi_jg49555 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112214 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G10662 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0746s00001.v1.0 |
| Poaceae | Oryza coarctata | 1 | Oco04G011850 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G015490 |