Basic Information
Locus ID:
Oco04G011710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 15111923 | 15113548 | - | Oco04G011710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 43,592.67 Da | 44.86 | 76.71 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 239 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 344 | 0.0098 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 349 | 9.16E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 410 | 7.2E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 201 | 239 | 4.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 344 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 198 | 0.42 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 347 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 347 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 248 | 8.637032 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 331 | 345 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_040377344.1 | WD repeat-containing protein LWD1 [Oryza brachyantha] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BVS8 | WD_REPEATS_REGION domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology