Basic Information
Locus ID:
Oco04G010290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 12903337 | 12953360 | - | Oco04G010290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 470,788.38 Da | 44.36 | 90.87 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2619 | 2723 | 5.13108E-8 | - |
| CDD | cd00821 | PH | 835 | 932 | 0.00436681 | - |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 380 | 3.1E-63 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2282 | 2366 | 8.0E-8 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3405 | 3558 | 2.3E-12 | IPR009543 |
| Pfam | PF00168 | C2 domain | 2619 | 2725 | 6.1E-7 | IPR000008 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.9E-31 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1988 | 2132 | 1.3E-12 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 798 | 6.6E-32 | IPR031642 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3808 | 3950 | 2.0E-8 | IPR031645 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2612 | 2724 | 2.98E-7 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 840 | 942 | 3.89E-6 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2602 | 2741 | 2.1E-8 | IPR035892 |
| SMART | SM00233 | PH_update | 795 | 939 | 0.0015 | IPR001849 |
| SMART | SM00694 | dysfc | 2956 | 2994 | 1.8E-4 | IPR006614 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2600 | 2736 | 10.187336 | IPR000008 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_015689233.1 | uncharacterized protein LOC102707936 [Oryza brachyantha] | 0 |
| Q8BX70 | Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1FG62 | C2 domain-containing protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_035949 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology