Basic Information
Locus ID:
Oco04G010260
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 12873273 | 12877729 | + | Oco04G010260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 50,229.77 Da | 53.31 | 69.21 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 274 | 338 | 3.0674E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 68 | 153 | 4.03159E-39 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 274 | 341 | 5.8E-16 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 72 | 153 | 1.2E-16 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 265 | 345 | 1.96E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 67 | 167 | 2.49E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 57 | 170 | 1.2E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 257 | 350 | 9.3E-22 | IPR036910 |
| SMART | SM00501 | bright_3 | 67 | 158 | 8.1E-24 | IPR001606 |
| SMART | SM00398 | hmgende2 | 273 | 342 | 9.8E-20 | IPR009071 |
| SMART | SM01014 | ARID_2 | 63 | 153 | 7.0E-21 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 274 | 341 | 15.695063 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 66 | 157 | 24.295837 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 426 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006665033.2 | high mobility group B protein 15-like [Oryza brachyantha] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1FGL1 | ARID domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_038765 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology