Basic Information
Locus ID:
Oco04G008570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 8836281 | 8840935 | + | Oco04G008570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 66,120.46 Da | 50.85 | 89.21 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 553 | 1.15155E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 553 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 383 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 298 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 343 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 510 | 0.0059 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 553 | 2.62E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 357 | 462 | 2.6E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 356 | 1.7E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 463 | 591 | 2.5E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 346 | 383 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 425 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 554 | 9.4E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 465 | 32.0 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 2.0E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 511 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 556 | 11.339228 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 9.757418 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 9.715902 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.048583 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 563 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 13.917108 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 592 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006647187.1 | WD repeat-containing protein 26 homolog [Oryza brachyantha] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F6K9 | WD repeat-containing protein 26-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_010374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology