Basic Information
Locus ID:
Oco04G008480
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 8742995 | 8746883 | - | Oco04G008480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 38,074.77 Da | 42.23 | 70.35 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 197 | 325 | 3.56308E-65 | - |
| CDD | cd16571 | RING-HC_SIAHs | 81 | 119 | 3.28973E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 125 | 324 | 7.5E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 136 | 328 | 1.63E-50 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 124 | 1.06E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 191 | 4.6E-18 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 194 | 324 | 4.2E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 125 | 2.5E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 119 | 9.523925 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 136 | 196 | 14.185511 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_006647185.1 | E3 ubiquitin-protein ligase SINAT5 [Oryza brachyantha] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | J3LBY9 | RING-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 GN=102707930 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology