Basic Information
Locus ID:
Oco04G008330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 8520915 | 8539856 | - | Oco04G008330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 126,311.83 Da | 39.46 | 108.75 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 57 | 317 | 2.8418E-58 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 913 | 1124 | 7.07453E-106 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 595 | 871 | 8.63224E-59 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 602 | 732 | 5.4E-11 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 423 | 460 | 4.4E-6 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 160 | 296 | 2.5E-10 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 923 | 1071 | 5.3E-26 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 59 | 317 | 3.14E-19 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 912 | 1132 | 2.25E-60 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 339 | 517 | 1.13E-37 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 593 | 877 | 3.01E-35 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 879 | 1140 | 9.1E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 329 | 401 | 6.6E-12 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 35 | 328 | 5.1E-30 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 402 | 530 | 1.3E-27 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 560 | 877 | 1.9E-35 | IPR036640 |
| SMART | SM00382 | AAA_5 | 370 | 501 | 1.1E-7 | IPR003593 |
| SMART | SM00382 | AAA_5 | 932 | 1117 | 8.6E-7 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 343 | 519 | 13.832352 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 90 | 309 | 20.17956 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 593 | 859 | 20.035053 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 898 | 1140 | 16.353348 | IPR003439 |
| Coils | Coil | Coil | 190 | 210 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_052142892.1 | ABC transporter C family member 3-like [Oryza glaberrima] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JYL2 | ABC transporter C family member 3 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology